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  5. Lfl_g10267

Lfl_g10267 (OLI7, RPL5B)


Aliases : OLI7, RPL5B

Description : component *(uL18) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0002471 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10267

Target Alias Description ECC score Gene Family Method Actions
AT3G25520 OLI5, RPL5A, PGY3, ATL5 ribosomal protein L5 0.02 OrthoFinder output from all 47 species
AT5G39740 OLI7, RPL5B ribosomal protein L5 B 0.02 OrthoFinder output from all 47 species
Ala_g04462 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0136.g050950 OLI7, RPL5B not classified & original description: CDS=209-979 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.49 OLI7, RPL5B Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g01074 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
LOC_Os01g67134.1 OLI5, RPL5A,... component RPL5 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_70965g0010 OLI7, RPL5B component RPL5 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp4g15800.1 OLI7, RPL5B component RPL5 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g02730 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c7_25660V3.1 OLI7, RPL5B, Pp3c7_25660 ribosomal protein L5 B 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006742 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012068 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g29764 No alias component *(uL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Solyc06g007670.4.1 OLI5, RPL5A,... component RPL5 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc06g082870.4.1 OLI5, RPL5A,... component RPL5 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g05892 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g15116 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g53510 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g01672 OLI7, RPL5B component *(uL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e000256_P001 OLI5, RPL5A,... component RPL5 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e028563_P004 OLI5, RPL5A,... component RPL5 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR005485 Rbsml_L5_euk/L18_arc 14 175
IPR025607 Rbsml_L5e_C 237 285
No external refs found!