Lfl_g10151 (emb1138)

Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g10151
Cluster	HCCA: Cluster_126

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00168720	emb1138,...	RNA processing.organelle machineries.RNA...	0.06	OrthoFinder output from all 47 species
AMTR_s00126p00110160	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.08	OrthoFinder output from all 47 species
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.03	OrthoFinder output from all 47 species
Adi_g023797	PMH1, ATRH9	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g055951	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g079817	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.11	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g22353	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.09	OrthoFinder output from all 47 species
Als_g07437	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.09	OrthoFinder output from all 47 species
Als_g26679	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Aop_g04482	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Aspi01Gene27689.t1	emb1138, Aspi01Gene27689	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene57148.t1	emb1138, Aspi01Gene57148	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0027.g023578	emb1138	not classified & original description: CDS=239-2545	0.03	OrthoFinder output from all 47 species
Azfi_s0166.g054407	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0245.g059942	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Cba_g11616	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.1	OrthoFinder output from all 47 species
Ceric.05G054100.1	emb1138, Ceric.05G054100	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Cre17.g727700	emb1138	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.04	OrthoFinder output from all 47 species
Dac_g12671	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Dcu_g39360	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Dde_g04423	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g05028	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01031360001	emb1138	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Gb_04849	emb1138	RH3 plastidial RNA basal splicing factor	0.12	OrthoFinder output from all 47 species
LOC_Os03g61220.1	emb1138, LOC_Os03g61220	RH3 plastidial RNA basal splicing factor	0.04	OrthoFinder output from all 47 species
Len_g12708	emb1138	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Len_g56603	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g07724	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.08	OrthoFinder output from all 47 species
Nbi_g06285	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.12	OrthoFinder output from all 47 species
Ore_g29256	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.08	OrthoFinder output from all 47 species
Pir_g19704	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g13008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Pp3c2_2520V3.1	emb1138, Pp3c2_2520	DEAD box RNA helicase (RH3)	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0281.g027107	PRH75	not classified & original description: CDS=248-2341	0.03	OrthoFinder output from all 47 species
Sam_g09733	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Sam_g13634	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Spa_g06691	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Spa_g17328	emb1138	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Spa_g40629	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g07132	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e011716_P001	emb1138, Zm00001e011716	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003951	NAD+ kinase activity	IEP	HCCA
MF	GO:0004096	catalase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006741	NADP biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	174	346
IPR001878	Znf_CCHC	762	778
IPR012562	GUCT	579	679
IPR001650	Helicase_C	385	492

External Links

No external refs found!

Lfl_g10151 (emb1138)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation