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  5. Aop_g14447

Aop_g14447


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14447
Cluster HCCA: Cluster_329

Target Alias Description ECC score Gene Family Method Actions
Ala_g01971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g23125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Cba_g17032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.07 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g28420 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ehy_g13206 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
MA_324587g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g02248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10683 No alias A1-class (Pepsin) protease & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09323 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Spa_g21602 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Spa_g26608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 184 205
IPR000571 Znf_CCCH 121 145
IPR000571 Znf_CCCH 235 261
No external refs found!