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  5. Aop_g14017

Aop_g14017


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14017

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.03 OrthoFinder output from all 47 species
MA_10432908g0020 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Nbi_g03863 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g07185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437743 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc04g007510.4.1 Solyc04g007510 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1121 1222
IPR001650 Helicase_C 927 1056
IPR011709 DEAD-box_helicase_OB_fold 1310 1409
IPR011545 DEAD/DEAH_box_helicase_dom 640 803
No external refs found!