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  5. Aop_g13535

Aop_g13535


Description : plastidial RNA splicing factor *(HPE1) & original description: none


Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13535

Target Alias Description ECC score Gene Family Method Actions
AT1G70200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Aob_g32545 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.04G006400.1 Ceric.04G006400 plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g11586 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Dde_g26366 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020168001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
MA_10435608g0010 No alias HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp1g21620.1 No alias HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Msp_g01582 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g24330 No alias plastidial RNA splicing factor *(HPE1) & original... 0.05 OrthoFinder output from all 47 species
Pir_g16008 No alias plastidial RNA splicing factor *(HPE1) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015459 No alias not classified & original description: CDS=1-342 0.02 OrthoFinder output from all 47 species
Sam_g40721 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Smo442087 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Solyc05g006070.4.1 Solyc05g006070 HPE1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Spa_g30782 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e013842_P001 Zm00001e013842 HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!