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  5. Aop_g13512

Aop_g13512


Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Aop_g13512

Target Alias Description ECC score Gene Family Method Actions
AT1G15280 No alias CASC3/Barentsz eIF4AIII binding 0.04 OrthoFinder output from all 47 species
Adi_g004430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ala_g09171 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dac_g09674 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dac_g10441 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g14577 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01017130001 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Nbi_g12770 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ore_g37838 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pir_g66513 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Solyc12g042990.3.1 Solyc12g042990 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Spa_g54006 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Tin_g04726 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 143 207
No external refs found!