1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g12658

Aop_g12658


Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & original description: none


Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12658

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dac_g23641 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Msp_g08797 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Spa_g08369 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Zm00001e011842_P001 Zm00001e011842 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 366 469
IPR011545 DEAD/DEAH_box_helicase_dom 153 324
IPR025313 DUF4217 511 571
No external refs found!