Aop_g12029

Description : component *(eS24) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g12029
Cluster	HCCA: Cluster_300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00221450	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT3G04920	No alias	Ribosomal protein S24e family protein	0.06	OrthoFinder output from all 47 species
AT5G28060	No alias	Ribosomal protein S24e family protein	0.06	OrthoFinder output from all 47 species
Adi_g102131	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g11596	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g05584	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0103.g044621	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.04G017300.1	Ceric.04G017300	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.39G012600.1	Ceric.39G012600	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g17551	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g25341	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g05540	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01021860001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Gb_38272	No alias	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os01g52490.1	LOC_Os01g52490	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os02g13530.1	LOC_Os02g13530	component RPS24 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os06g36160.1	LOC_Os06g36160	component RPS24 of SSU proteome	0.06	OrthoFinder output from all 47 species
Len_g49108	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g02767	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Msp_g07394	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Msp_g38789	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Pir_g12348	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_10760V3.1	Pp3c12_10760	Ribosomal protein S24e family protein	0.04	OrthoFinder output from all 47 species
Pp3c12_10870V3.1	Pp3c12_10870	Ribosomal protein S24e family protein	0.01	OrthoFinder output from all 47 species
Pp3c13_22220V3.1	Pp3c13_22220	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
Pp3c3_19700V3.1	Pp3c3_19700	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
Pp3c4_16903V3.1	Pp3c4_16903	Ribosomal protein S24e family protein	0.02	OrthoFinder output from all 47 species
Ppi_g14489	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g14490	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g28244	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g12713	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g12714	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g45993	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g50017	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo227903	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Smo271584	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc01g097870.3.1	Solyc01g097870	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc06g084230.3.1	Solyc06g084230	component RPS24 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc09g065330.3.1	Solyc09g065330	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g10585	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g19361	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g29759	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e014422_P002	Zm00001e014422	component RPS24 of SSU proteome	0.05	OrthoFinder output from all 47 species
Zm00001e019937_P001	Zm00001e019937	component RPS24 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e028203_P001	Zm00001e028203	component RPS24 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e030668_P001	Zm00001e030668	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004055	argininosuccinate synthase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006525	arginine metabolic process	IEP	HCCA
BP	GO:0006526	arginine biosynthetic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
CC	GO:0061617	MICOS complex	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	25	103

External Links

No external refs found!

Aop_g12029

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation