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  5. Aop_g11887

Aop_g11887


Description : not classified & original description: none


Gene families : OG0000425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000425_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g11887

Target Alias Description ECC score Gene Family Method Actions
Adi_g076970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000655.31 No alias Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g13726 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012038001 No alias ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
LOC_Os06g12160.1 LOC_Os06g12160 ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
Len_g20901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04238 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_48428g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g12690.1 No alias ATPase family AAA domain-containing protein FIGL1... 0.03 OrthoFinder output from all 47 species
Pir_g02920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013985 No alias not classified & original description: CDS=19-1218 0.02 OrthoFinder output from all 47 species
Solyc06g071980.3.1 Solyc06g071980 ATPase family AAA domain-containing protein FIGL1... 0.01 OrthoFinder output from all 47 species
Solyc09g074950.3.1 Solyc09g074950 ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
Spa_g26388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 924 959
IPR003959 ATPase_AAA_core 771 901
No external refs found!