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  5. Aop_g11280

Aop_g11280


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g11280
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Ala_g02589 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35531 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g71690 No alias ornithine decarboxylase & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020830.56 No alias Polyamine metabolism.putrescine.synthesis.cytosolic... 0.01 OrthoFinder output from all 47 species
Dde_g09138 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g04980.1 LOC_Os04g04980 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species
Pir_g20540 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54737 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13449 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR022643 De-COase2_C 673 774
IPR001985 S-AdoMet_decarboxylase 20 336
IPR022644 De-COase2_N 439 672
No external refs found!