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  5. Aop_g09805

Aop_g09805 (DDB1A)


Aliases : DDB1A

Description : core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes & original description: none


Gene families : OG0004030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g09805

Target Alias Description ECC score Gene Family Method Actions
AT4G05420 DDB1A damaged DNA binding protein 1A 0.02 OrthoFinder output from all 47 species
AT4G21100 DDB1B damaged DNA binding protein 1B 0.02 OrthoFinder output from all 47 species
Ala_g09123 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Als_g03248 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Aob_g02368 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Ceric.30G020500.1 DDB1A, Ceric.30G020500 core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Cre10.g432000 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dcu_g08979 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Dde_g02981 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Ehy_g01666 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Gb_36569 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51480.1 DDB1A, LOC_Os05g51480 component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species
MA_41156g0010 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.02 OrthoFinder output from all 47 species
Ore_g15533 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.07 OrthoFinder output from all 47 species
Ppi_g02374 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0201.g025613 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.05 OrthoFinder output from all 47 species
Sam_g12601 No alias core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Solyc02g021650.3.1 DDB1A, Solyc02g021650 component DDB1 of UV-damaged DNA-binding protein... 0.04 OrthoFinder output from all 47 species
Spa_g04425 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Zm00001e032569_P002 DDB1A, Zm00001e032569 component DDB1 of UV-damaged DNA-binding protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 745 1057
IPR018846 Cleavage/polyA-sp_fac_asu_N 76 537
No external refs found!