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  5. Aop_g09403

Aop_g09403


Description : pre-60S ribosomal subunit assembly factor *(EBP2) & original description: none


Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g09403
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00176430 evm_27.TU.AmTr_v1... Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Aob_g04107 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27253.t1 Aspi01Gene27253 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
Ceric.28G019100.1 Ceric.28G019100 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.12 No alias Probable rRNA-processing protein EBP2 homolog... 0.01 OrthoFinder output from all 47 species
Cre07.g351750 No alias Probable rRNA-processing protein EBP2 homolog... 0.02 OrthoFinder output from all 47 species
Dac_g09923 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
LOC_Os07g29320.1 LOC_Os07g29320 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
Lfl_g07271 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.05 OrthoFinder output from all 47 species
Mp3g18310.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.03 OrthoFinder output from all 47 species
Nbi_g17719 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000072 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Sam_g13265 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.06 OrthoFinder output from all 47 species
Sam_g25020 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.05 OrthoFinder output from all 47 species
Smo175633 No alias Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Solyc01g006090.3.1 Solyc01g006090 pre-60S ribosomal subunit assembly factor (EBP2) 0.05 OrthoFinder output from all 47 species
Solyc01g006170.4.1 Solyc01g006170 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
Zm00001e013941_P001 Zm00001e013941 pre-60S ribosomal subunit assembly factor (EBP2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR008610 Ebp2 40 282
No external refs found!