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  5. Aop_g08777

Aop_g08777 (VCS)


Aliases : VCS

Description : scaffold component *(VCS) of mRNA decapping complex & original description: none


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08777
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Als_g15285 VCS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63425 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Aob_g03608 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Cba_g14873 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Cba_g27245 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Ceric.06G068900.1 VCS, Ceric.06G068900 scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Dac_g14564 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Dde_g10360 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g07954 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g20389 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Gb_04906 VCS scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g49090.1 VCS, LOC_Os02g49090 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g01496 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ore_g09332 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ore_g36602 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Pir_g25441 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g10110 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009621 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Sam_g16345 No alias scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Solyc10g005920.4.1 VCS, Solyc10g005920 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Spa_g10517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37076 VCR not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08563 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e015689_P001 VCS, Zm00001e015689 scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species
Zm00001e023399_P003 VCS, Zm00001e023399 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 236 549
No external refs found!