Description : SSU processome assembly factor *(UTP6) & original description: none
Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G28200 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.03 | OrthoFinder output from all 47 species | |
Als_g22988 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.34G074700.1 | Ceric.34G074700 | SSU processome assembly factor *(UTP6) & original... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000571.29 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01012705001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g01350.1 | LOC_Os02g01350 | SSU processome assembly factor (UTP6) | 0.02 | OrthoFinder output from all 47 species | |
MA_10435952g0010 | No alias | SSU processome assembly factor (UTP6) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g18520.1 | No alias | SSU processome assembly factor (UTP6) | 0.02 | OrthoFinder output from all 47 species | |
Ore_g44960 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0028.g009974 | No alias | chloroplast import factor *(PRAT1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g29993 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g02822 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e011580_P001 | Zm00001e011580 | SSU processome assembly factor (UTP6) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEA | Interproscan |
MF | GO:0030515 | snoRNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
CC | GO:0005685 | U1 snRNP | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
BP | GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | IEP | HCCA |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
BP | GO:0031167 | rRNA methylation | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
MF | GO:0070037 | rRNA (pseudouridine) methyltransferase activity | IEP | HCCA |
BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013949 | Utp6 | 9 | 77 |
No external refs found! |