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  5. Aop_g08051

Aop_g08051


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08051

Target Alias Description ECC score Gene Family Method Actions
Ala_g08629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.04 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.03 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.04 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.03 OrthoFinder output from all 47 species
Dac_g12970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27748 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02839 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022126001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23949 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000825 No alias not classified & original description: CDS=373-1662 0.02 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 17 75
IPR000504 RRM_dom 106 166
IPR000504 RRM_dom 523 577
No external refs found!