Aop_g07938

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g07938
Cluster	HCCA: Cluster_300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00211990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00013p00223470	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00013p00224030	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00225150	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.07	OrthoFinder output from all 47 species
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.07	OrthoFinder output from all 47 species
Adi_g041566	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0243.g059889	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s2217.g109896	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.02G040500.1	Ceric.02G040500	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.36G028400.1	Ceric.36G028400	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g23579	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os08g41810.1	LOC_Os08g41810	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
LOC_Os09g08430.1	LOC_Os09g08430	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g00941	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g59449	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Nbi_g03330	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g39286	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_5840V3.1	Pp3c11_5840	Ribosomal protein L22p/L17e family protein	0.03	OrthoFinder output from all 47 species
Pp3c1_6650V3.1	Pp3c1_6650	Ribosomal protein L22p/L17e family protein	0.03	OrthoFinder output from all 47 species
Ppi_g23134	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g15137	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc03g111230.4.1	Solyc03g111230	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc06g071870.3.1	Solyc06g071870	component RPL17 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc06g071880.4.1	Solyc06g071880	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g12589	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g15052	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g51098	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g05352	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e003661_P001	Zm00001e003661	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e005470_P001	Zm00001e005470	component RPL17 of LSU proteome component	0.01	OrthoFinder output from all 47 species
Zm00001e021953_P003	Zm00001e021953	component RPL17 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e026882_P002	Zm00001e026882	component RPL17 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e031261_P001	Zm00001e031261	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004055	argininosuccinate synthase activity	IEP	HCCA
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005787	signal peptidase complex	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006525	arginine metabolic process	IEP	HCCA
BP	GO:0006526	arginine biosynthetic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	152

External Links

No external refs found!

Aop_g07938

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation