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  5. Aop_g07111

Aop_g07111


Description : chromatin architectural modulator *(DEK) & original description: none


Gene families : OG0001438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g07111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00118220 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G63550 No alias DEK domain-containing chromatin associated protein 0.02 OrthoFinder output from all 47 species
Adi_g021163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g029375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19234 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Als_g51377 No alias chromatin architectural modulator *(DEK) & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z004400.1 Ceric.1Z004400 chromatin architectural modulator *(DEK) & original... 0.08 OrthoFinder output from all 47 species
Ceric.20G046000.1 Ceric.20G046000 chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Dac_g12801 No alias chromatin architectural modulator *(DEK) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g03983 No alias chromatin architectural modulator *(DEK) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g17466 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g03874 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g06745 No alias chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01014672001 No alias No description available 0.05 OrthoFinder output from all 47 species
Len_g22065 No alias chromatin architectural modulator *(DEK) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g26282 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g04863 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Ore_g08356 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Pir_g18716 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Pir_g38019 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000356 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g097490.4.1 Solyc03g097490 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g13094 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e028422_P002 Zm00001e028422 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014876 DEK_C 330 383
No external refs found!