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  5. Aop_g06975

Aop_g06975


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06975
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT5G21160 No alias LA RNA-binding protein 0.03 OrthoFinder output from all 47 species
Adi_g020044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Ala_g02674 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43520.t1 Aspi01Gene43520 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56016.t1 Aspi01Gene56016 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13843 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.04 OrthoFinder output from all 47 species
Ceric.29G061100.1 Ceric.29G061100 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g24709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g07940 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01009971001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01029892001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os01g16110.1 LOC_Os01g16110 XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
LOC_Os09g36920.1 LOC_Os09g36920 La-related protein 1B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07864 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
MA_162692g0010 No alias XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g19204 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g07243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18023 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g18987 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13658 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g26426 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc06g073550.3.1 Solyc06g073550 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032048 cardiolipin metabolic process IEP HCCA
BP GO:0032049 cardiolipin biosynthetic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 457 513
No external refs found!