Aop_g06101

Description : chromatin remodeling factor *(ALC1) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g06101

Target	Alias	Description	ECC score	Gene Family Method
Ala_g36219	ATCHR12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Cba_g02108	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.10	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dde_g03505	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ehy_g18387	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Len_g29294	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Msp_g15707	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g12701	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16130	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g06697	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04716	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013333	PKL, GYM, CHR6,...	not classified & original description: CDS=412-5028	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g50500	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Sam_g52523	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g06215	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28925	PKR1, CHR4	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	61	348
IPR001650	Helicase_C	373	494

External Links

No external refs found!

Aop_g06101

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation