Aop_g05323 (ATCHR12)

Aliases : ATCHR12

Description : SMARCA component *(SYD/BRM/MINU) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g05323

Target	Alias	Description	ECC score	Gene Family Method
AT2G44980	No alias	SNF2 domain-containing protein / helicase...	0.02	OrthoFinder output from all 47 species
Adi_g011986	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aspi01Gene16597.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25758.t1	SYD, CHR3,...	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene70267.t1	Aspi01Gene70267	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene70267.t2	Aspi01Gene70267	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Cre03.g179300	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Gb_35181	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
LOC_Os07g46590.1	CHR5, LOC_Os07g46590	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
Mp1g05480.1	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	OrthoFinder output from all 47 species
Mp2g26680.1	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Mp4g00040.1	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Pir_g11423	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ppi_g18943	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981	PKL, GYM, CHR6,...	WRKY-type transcription factor & original description: CDS=1-4410	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013333	PKL, GYM, CHR6,...	not classified & original description: CDS=412-5028	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Spa_g30961	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0016559	peroxisome fission	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	956	1069
IPR029295	SnAC	1159	1222
IPR000330	SNF2_N	647	935

External Links

No external refs found!

Aop_g05323 (ATCHR12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation