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  5. Aop_g04623

Aop_g04623 (U1-70K, U1SNRNP)


Aliases : U1-70K, U1SNRNP

Description : component *(U1-70K) of U1 snRNP complex & original description: none


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g04623

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00067090 U1-70K, U1SNRNP,... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Adi_g056623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10647 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s2260.g110011 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g27207 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.27 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre16.g656250 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Dde_g50672 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01018981001 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Gb_32834 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os10g02630.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species
MA_104182g0010 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Nbi_g05791 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Pnu_g03596 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Pnu_g11483 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021510 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Sam_g15737 No alias component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Solyc02g085420.4.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.05 OrthoFinder output from all 47 species
Spa_g26650 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g56473 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e012949_P002 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007029 endoplasmic reticulum organization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 209
IPR022023 U1snRNP70_N 41 129
No external refs found!