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  5. Aop_g04365

Aop_g04365


Description : not classified & original description: none


Gene families : OG0007895 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g04365

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00105110 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Adi_g023642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G033000.1 Ceric.03G033000 not classified & original description: pacid=50571877... 0.03 OrthoFinder output from all 47 species
Cre03.g158750 No alias DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g02991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_72129g0010 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g11930.1 No alias DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Nbi_g17950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g015930.3.1 Solyc09g015930 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 170 341
IPR001650 Helicase_C 379 494
No external refs found!