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  5. Aop_g02477

Aop_g02477


Description : Trihelix-type transcription factor & original description: none


Gene families : OG0001890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g02477
Cluster HCCA: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
Ala_g10269 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10408 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g009895 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g19503 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011168001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Gb_22614 No alias transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
LOC_Os05g03740.1 LOC_Os05g03740 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Len_g19288 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12494 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436704g0010 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Nbi_g42102 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g11122 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45245 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03613 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51759 No alias Trihelix-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g51760 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 81 161
No external refs found!