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  5. Lfl_g08834

Lfl_g08834


Description : not classified & original description: none


Gene families : OG0002693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g08834

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00221370 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT5G55100 No alias SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 0.03 OrthoFinder output from all 47 species
Als_g14000 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g48145 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene00369.t1 Aspi01Gene00369 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0198.g057435 No alias not classified & original description: CDS=75-2141 0.03 OrthoFinder output from all 47 species
Cba_g36110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G007400.1 Ceric.22G007400 not classified & original description: pacid=50614788... 0.06 OrthoFinder output from all 47 species
Dac_g21146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38320 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g42083 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g40347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037687001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037689001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os01g50320.1 LOC_Os01g50320 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g26427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g37760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g42634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g04455 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05722 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53864 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g04625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028122_P004 Zm00001e028122 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 182 230
IPR019147 SWAP_N_domain 32 140
No external refs found!