Aop_g02040

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g02040
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	XW6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
AT1G58380	XW6	Ribosomal protein S5 family protein	0.02	OrthoFinder output from all 47 species
AT1G58684	No alias	Ribosomal protein S5 family protein	0.09	OrthoFinder output from all 47 species
AT1G58983	No alias	Ribosomal protein S5 family protein	0.09	OrthoFinder output from all 47 species
AT1G59359	No alias	Ribosomal protein S5 family protein	0.09	OrthoFinder output from all 47 species
AT2G41840	No alias	Ribosomal protein S5 family protein	0.17	OrthoFinder output from all 47 species
Adi_g075067	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g12987	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Als_g47982	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene20101.t1	Aspi01Gene20101	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0110.g045473	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0377.g067313	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g21907	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.30G013900.1	Ceric.30G013900	component *(uS5) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Ceric.31G046200.1	Ceric.31G046200	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.135	XW6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Dac_g00614	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Dac_g05646	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g05334	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g49280	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dde_g04227	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_04606	No alias	component RPS2 of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_04608	No alias	component RPS2 of SSU proteome	0.12	OrthoFinder output from all 47 species
Gb_04609	No alias	component RPS2 of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os03g59310.1	LOC_Os03g59310	component RPS2 of SSU proteome	0.15	OrthoFinder output from all 47 species
LOC_Os07g10660.1	LOC_Os07g10660	component RPS2 of SSU proteome	0.1	OrthoFinder output from all 47 species
Lfl_g00692	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g25707	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.06	OrthoFinder output from all 47 species
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.09	OrthoFinder output from all 47 species
Msp_g07675	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Msp_g10873	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g03400	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g03516	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ore_g03514	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g11571	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g29029	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Pir_g57889	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c20_18740V3.1	Pp3c20_18740	Ribosomal protein S5 family protein	0.05	OrthoFinder output from all 47 species
Pp3c24_5780V3.1	Pp3c24_5780	Ribosomal protein S5 family protein	0.09	OrthoFinder output from all 47 species
Ppi_g24410	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005106	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g08630	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g25636	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g26796	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Solyc04g063290.3.1	Solyc04g063290	component RPS2 of SSU proteome	0.14	OrthoFinder output from all 47 species
Solyc04g074300.3.1	Solyc04g074300	component RPS2 of SSU proteome	0.17	OrthoFinder output from all 47 species
Spa_g13171	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g14513	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g17385	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Spa_g40249	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Spa_g47984	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Spa_g50366	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Spa_g57025	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Tin_g01630	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e006090_P001	Zm00001e006090	component RPS2 of SSU proteome	0.09	OrthoFinder output from all 47 species
Zm00001e011816_P001	Zm00001e011816	component RPS2 of SSU proteome	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0017182	peptidyl-diphthamide metabolic process	IEP	HCCA
BP	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018202	peptidyl-histidine modification	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0090560	2-(3-amino-3-carboxypropyl)histidine synthase activity	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1900247	regulation of cytoplasmic translational elongation	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	167	239
IPR013810	Ribosomal_S5_N	83	147

External Links

No external refs found!

Aop_g02040

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation