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  5. Lfl_g08708

Lfl_g08708


Description : not classified & original description: none


Gene families : OG0007989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g08708

Target Alias Description ECC score Gene Family Method Actions
Adi_g015449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26114 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g37823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G074200.1 Ceric.16G074200 not classified & original description: pacid=50590172... 0.05 OrthoFinder output from all 47 species
Dac_g03419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18646 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g03984 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_17113 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g10362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06199 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 939 1026
IPR007502 Helicase-assoc_dom 780 853
IPR001650 Helicase_C 571 690
IPR011545 DEAD/DEAH_box_helicase_dom 344 499
IPR014720 dsRBD_dom 60 114
IPR014720 dsRBD_dom 159 214
No external refs found!