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  5. Lfl_g07837

Lfl_g07837 (XPO1A, HIT2, ATCRM1,...)


Aliases : XPO1A, HIT2, ATCRM1, XPO1, ATXPO1

Description : nucleocytoplasmic export karyopherin *(XPO1) & original description: none


Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07837
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00152740 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Adi_g018503 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g14729 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Als_g29515 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.04 OrthoFinder output from all 47 species
Aob_g14359 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g01399 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene60835.t1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G073300.1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g13815 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.07 OrthoFinder output from all 47 species
Dde_g02403 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01024418001 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
MA_40908g0010 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species
MA_88625g0010 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Ppi_g03977 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.05 OrthoFinder output from all 47 species
Sam_g40475 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g40917 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Smo233936 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc03g096920.3.1 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.03 OrthoFinder output from all 47 species
Spa_g15690 XPO1A, HIT2,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g03542 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e006430_P001 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Zm00001e011624_P002 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR040485 XPO1_repeat_3 486 536
IPR013598 Exportin-1/Importin-b-like 114 257
IPR041123 CRM1_repeat 336 371
IPR014877 XPO1_C_dom 710 1032
IPR001494 Importin-beta_N 36 102
IPR041235 Exp1_repeat_2 406 473
No external refs found!