Lfl_g07780


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07780
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT1G77170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g020545 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033010 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g051582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059237 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076885 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099198 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g34145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03970 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21253 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24626 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26153 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28322 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32153 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18255 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g57160 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41404 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70790.t1 Aspi01Gene70790 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07323 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07412 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G107500.1 Ceric.01G107500 not classified & original description: pacid=50592273... 0.03 OrthoFinder output from all 47 species
Ceric.10G047400.1 OTP84, Ceric.10G047400 not classified & original description: pacid=50612794... 0.02 OrthoFinder output from all 47 species
Ceric.1Z081600.1 CRR22, Ceric.1Z081600 not classified & original description: pacid=50582216... 0.02 OrthoFinder output from all 47 species
Ceric.24G008500.1 Ceric.24G008500 not classified & original description: pacid=50628459... 0.03 OrthoFinder output from all 47 species
Ceric.24G019600.1 Ceric.24G019600 not classified & original description: pacid=50629269... 0.03 OrthoFinder output from all 47 species
Ceric.27G070400.1 CRR22, Ceric.27G070400 not classified & original description: pacid=50605716... 0.04 OrthoFinder output from all 47 species
Ceric.29G017900.1 Ceric.29G017900 not classified & original description: pacid=50624370... 0.05 OrthoFinder output from all 47 species
Ceric.30G025700.1 CRR22, Ceric.30G025700 not classified & original description: pacid=50609433... 0.02 OrthoFinder output from all 47 species
Ceric.30G075100.1 Ceric.30G075100 not classified & original description: pacid=50609517... 0.03 OrthoFinder output from all 47 species
Ceric.32G071400.1 CRR22, Ceric.32G071400 not classified & original description: pacid=50598182... 0.03 OrthoFinder output from all 47 species
Ceric.36G028800.1 Ceric.36G028800 not classified & original description: pacid=50568963... 0.03 OrthoFinder output from all 47 species
Ceric.38G063600.1 Ceric.38G063600 not classified & original description: pacid=50580365... 0.02 OrthoFinder output from all 47 species
Dac_g19103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19488 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35456 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39652 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43220 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47810 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06009 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.04 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.04 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33773 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54314 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g02471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23298 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g42294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23480 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12351 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32073 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33539 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42940 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g58117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017029 No alias not classified & original description: CDS=1-2337 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018685 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025587 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s3367.g028731 No alias not classified & original description: CDS=2473-3459 0.02 OrthoFinder output from all 47 species
Sam_g02656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
Spa_g01489 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44852 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Zm00001e010182_P001 Zm00001e010182 Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 679 741
IPR002885 Pentatricopeptide_repeat 636 657
IPR002885 Pentatricopeptide_repeat 536 558
IPR002885 Pentatricopeptide_repeat 463 493
IPR002885 Pentatricopeptide_repeat 334 354
IPR002885 Pentatricopeptide_repeat 158 204
IPR002885 Pentatricopeptide_repeat 562 609
IPR002885 Pentatricopeptide_repeat 360 404
IPR002885 Pentatricopeptide_repeat 259 305
IPR002885 Pentatricopeptide_repeat 55 102
No external refs found!