1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g05658

Lfl_g05658 (ECT2)


Aliases : ECT2

Description : methylation reader *(ECT) & original description: none


Gene families : OG0000330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05658

Target Alias Description ECC score Gene Family Method Actions
AT3G13460 ECT2 evolutionarily conserved C-terminal region 2 0.03 OrthoFinder output from all 47 species
AT5G58190 ECT10 evolutionarily conserved C-terminal region 10 0.02 OrthoFinder output from all 47 species
AT5G61020 ECT3 evolutionarily conserved C-terminal region 3 0.03 OrthoFinder output from all 47 species
Adi_g057161 ECT5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061121 ECT8 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087071 ECT7 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02554 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24152 ECT2 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47637 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03894 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32012 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06040 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18337 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0213.g058278 ECT6 methylation reader *(ECT) & original description: CDS=1-2130 0.03 OrthoFinder output from all 47 species
Cba_g26970 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G060700.1 ECT5, Ceric.05G060700 methylation reader *(ECT) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g20188 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07823 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029460001 ECT5 No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01032236001 ECT5 No description available 0.03 OrthoFinder output from all 47 species
Gb_19406 ECT7 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
LOC_Os04g04000.1 ECT4, LOC_Os04g04000 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
LOC_Os07g07490.1 ECT3, LOC_Os07g07490 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Len_g55797 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16648 ECT8 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
MA_130754g0010 ECT2 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
MA_26834g0010 ECT8 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Ore_g26129 ECT5 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g19610 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33874 ECT10 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006035 ECT8 methylation reader *(ECT) & original description: CDS=18-1823 0.02 OrthoFinder output from all 47 species
Sam_g24888 No alias methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g028860.3.1 ECT2, Solyc01g028860 methylation reader (ECT) 0.02 OrthoFinder output from all 47 species
Solyc05g032850.3.1 ECT5, Solyc05g032850 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Zm00001e011469_P004 ECT4, Zm00001e011469 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Zm00001e032894_P001 ECT4, Zm00001e032894 methylation reader (ECT) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 424 562
No external refs found!