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  5. Lfl_g05220

Lfl_g05220


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05220

Target Alias Description ECC score Gene Family Method Actions
AT1G15920 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 OrthoFinder output from all 47 species
Adi_g024363 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Aspi01Gene25229.t2 Aspi01Gene25229 deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025723 No alias not classified & original description: CDS=1-1119 0.04 OrthoFinder output from all 47 species
Cre03.g157300 No alias Probable CCR4-associated factor 1 homolog 7... 0.01 OrthoFinder output from all 47 species
Dac_g05036 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os09g24990.2 LOC_Os09g24990 Probable CCR4-associated factor 1 homolog 7... 0.04 OrthoFinder output from all 47 species
Ore_g08887 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Pir_g37182 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g16322 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Tin_g04415 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 159 206
IPR006941 RNase_CAF1 15 140
No external refs found!