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  5. Lfl_g05042

Lfl_g05042 (SCC2, ATSCC2, EMB2773)


Aliases : SCC2, ATSCC2, EMB2773

Description : adherin *(SCC2) & original description: none


Gene families : OG0005074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05042
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00053630 SCC2, ATSCC2,... Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder output from all 47 species
AT5G15540 SCC2, ATSCC2, EMB2773 PHD finger family protein 0.09 OrthoFinder output from all 47 species
Adi_g086269 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04894 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g16239 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g08111 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g31097 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05755 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15027.t1 SCC2, ATSCC2,... adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15029.t1 SCC2, ATSCC2,... adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007745 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: CDS=544-5985 0.04 OrthoFinder output from all 47 species
Ceric.14G000800.1 SCC2, ATSCC2,... adherin *(SCC2) & original description: pacid=50634323... 0.12 OrthoFinder output from all 47 species
Dac_g16382 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39401 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.13 OrthoFinder output from all 47 species
Ehy_g06224 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011514001 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.11 OrthoFinder output from all 47 species
Gb_05661 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.06 OrthoFinder output from all 47 species
Gb_41687 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.04 OrthoFinder output from all 47 species
LOC_Os07g01940.1 SCC2, ATSCC2,... adherin (SCC2) 0.09 OrthoFinder output from all 47 species
Len_g24640 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437214g0020 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.08 OrthoFinder output from all 47 species
Mp4g10640.1 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.07 OrthoFinder output from all 47 species
Msp_g24576 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28623 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28888 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08021 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05355 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g26001 No alias adherin *(SCC2) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g48907 No alias adherin *(SCC2) & original description: none 0.1 OrthoFinder output from all 47 species
Smo440913 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.09 OrthoFinder output from all 47 species
Spa_g04412 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g05250 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e011569_P001 SCC2, ATSCC2,... adherin (SCC2) 0.04 OrthoFinder output from all 47 species
Zm00001e032695_P001 SCC2, ATSCC2,... adherin (SCC2) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR024986 Nipped-B_C 1351 1546
No external refs found!