Lfl_g05025 (RKP)

Aliases : RKP

Description : E3 ubiquitin ligase *(RKP) & original description: none

Gene families : OG0003375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003375_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g05025

Target	Alias	Description	ECC score	Gene Family Method
AT2G22010	RKP	related to KPC1	0.02	OrthoFinder output from all 47 species
Adi_g011552	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.06	OrthoFinder output from all 47 species
Aev_g01602	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g13229	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g06774	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene09679.t1	RKP, Aspi01Gene09679	E3 ubiquitin ligase *(RKP) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g17418	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.30G032900.1	RKP, Ceric.30G032900	E3 ubiquitin ligase *(RKP) & original description:...	0.06	OrthoFinder output from all 47 species
Dcu_g09317	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g18147	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022217001	RKP	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_19146	RKP	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g08871	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.05	OrthoFinder output from all 47 species
MA_61184g0010	RKP	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp6g14830.1	RKP	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Msp_g15472	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g08940	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g13055	RKP	E3 ubiquitin ligase *(RKP) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013675	RKP	E3 ubiquitin ligase *(RKP) & original description: CDS=618-4622	0.02	OrthoFinder output from all 47 species
Sam_g29957	No alias	E3 ubiquitin ligase *(RKP) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc04g054140.4.1	RKP, Solyc04g054140	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Tin_g08746	RKP	E3 ubiquiTin ligase *(RKP) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e035603_P001	RKP, Zm00001e035603	E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	None	Extended
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0035145	exon-exon junction complex	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003877	SPRY_dom	150	268
IPR045737	RKP_N	13	139
IPR019474	Ub_conjug_fac_E4_core	799	988

External Links

No external refs found!

Lfl_g05025 (RKP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation