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  5. Lfl_g04723

Lfl_g04723


Description : component *(SRP54) of SRP (signal recognition particle) complex & original description: none


Gene families : OG0003514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04723

Target Alias Description ECC score Gene Family Method Actions
Adi_g058694 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Ceric.01G080500.1 Ceric.01G080500 component *(SRP54) of SRP (signal recognition particle)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021254.24 No alias Protein translocation.endoplasmic... 0.02 OrthoFinder output from all 47 species
GSVIVT01017362001 No alias Protein translocation.endoplasmic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g56600.1 LOC_Os01g56600 component SRP54 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species
MA_10429875g0010 No alias component SRP54 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species
Mp1g19000.1 No alias component SRP54 of SRP (signal recognition particle) complex 0.04 OrthoFinder output from all 47 species
Ppi_g03018 No alias component *(SRP54) of SRP (signal recognition particle)... 0.05 OrthoFinder output from all 47 species
Zm00001e028974_P003 Zm00001e028974 component SRP54 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR004125 Signal_recog_particle_SRP54_M 328 429
IPR000897 SRP54_GTPase_dom 102 296
IPR013822 Signal_recog_particl_SRP54_hlx 6 83
No external refs found!