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  5. Lfl_g04256

Lfl_g04256 (ATPRP40A, PRP40A)


Aliases : ATPRP40A, PRP40A

Description : pre-mRNA-processing protein *(PRP40A/B) & original description: none


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00227470 ATPRP40A,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
AT1G44910 ATPRP40A, PRP40A pre-mRNA-processing protein 40A 0.05 OrthoFinder output from all 47 species
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.07 OrthoFinder output from all 47 species
Adi_g079667 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g109853 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Ala_g02608 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Ala_g12867 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Als_g08024 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Als_g23383 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.08 OrthoFinder output from all 47 species
Aob_g02355 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0486.g073429 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G057100.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Ceric.36G014500.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.25 ATPRP40A, PRP40A No description available 0.02 OrthoFinder output from all 47 species
Cre07.g351000 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g33711 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.1 OrthoFinder output from all 47 species
Dde_g04452 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g02927 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009302001 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder output from all 47 species
Gb_14217 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.02 OrthoFinder output from all 47 species
LOC_Os01g34780.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.03 OrthoFinder output from all 47 species
MA_10433850g0010 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.06 OrthoFinder output from all 47 species
Mp2g00410.1 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.1 OrthoFinder output from all 47 species
Nbi_g29655 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g17451 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g37601 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Pir_g18693 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g36695 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01375 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Sam_g13746 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.09 OrthoFinder output from all 47 species
Sam_g40479 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Smo402621 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Solyc07g022760.4.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.07 OrthoFinder output from all 47 species
Spa_g10390 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Tin_g21928 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e020775_P002 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.04 OrthoFinder output from all 47 species
Zm00001e020778_P001 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 314 339
IPR001202 WW_dom 271 298
IPR002713 FF_domain 494 543
IPR002713 FF_domain 633 678
IPR002713 FF_domain 703 758
IPR002713 FF_domain 561 611
IPR002713 FF_domain 839 886
No external refs found!