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  5. Lfl_g04142

Lfl_g04142 (TRFL5)


Aliases : TRFL5

Description : telomeric dsDNA-binding protein & original description: none


Gene families : OG0003619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003619_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04142

Target Alias Description ECC score Gene Family Method Actions
AT1G06910 TRFL7 TRF-like 7 0.03 OrthoFinder output from all 47 species
AT5G58340 No alias myb-like HTH transcriptional regulator family protein 0.04 OrthoFinder output from all 47 species
Adi_g081475 ATTRB3, TBP2, TRB3 telomeric dsDNA-binding protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40768.t1 TRFL5, Aspi01Gene40768 telomeric dsDNA-binding protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12392 TRFL5 telomeric dsDNA-binding protein & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03052 TRFL5 telomeric dsDNA-binding protein & original description: none 0.05 OrthoFinder output from all 47 species
Mp3g00360.1 No alias transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Ore_g37085 No alias telomeric dsDNA-binding protein & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59859 TRFL5 telomeric dsDNA-binding protein & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c2_40V3.1 Pp3c2_40 myb-like HTH transcriptional regulator family protein 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 671 718
No external refs found!