Lfl_g04096 (54CP, SRP54CP, CPSRP54, FFC)

Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none

Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g04096

Target	Alias	Description	ECC score	Gene Family Method
AT5G03940	54CP, SRP54CP,...	chloroplast signal recognition particle 54 kDa subunit	0.06	OrthoFinder output from all 47 species
Aob_g13062	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Aop_g31519	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Aspi01Gene03019.t1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Azfi_s0352.g066605	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Ceric.03G060800.1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Dde_g10157	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Ehy_g19073	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 47 species
GSVIVT01033862001	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.03	OrthoFinder output from all 47 species
LOC_Os11g05552.1	54CP, SRP54CP,...	Signal recognition particle 54 kDa protein,...	0.02	OrthoFinder output from all 47 species
LOC_Os11g05556.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.02	OrthoFinder output from all 47 species
Mp1g05670.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.02	OrthoFinder output from all 47 species
Msp_g47300	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Pir_g60389	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Ppi_g12402	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Sam_g29558	No alias	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Tin_g12383	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Zm00001e039381_P004	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004125	Signal_recog_particle_SRP54_M	419	518
IPR000897	SRP54_GTPase_dom	193	388
IPR013822	Signal_recog_particl_SRP54_hlx	98	175

External Links

No external refs found!

Lfl_g04096 (54CP, SRP54CP, CPSRP54, FFC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation