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  5. Lfl_g04055

Lfl_g04055 (STM, SHM1, SHMT1)


Aliases : STM, SHM1, SHMT1

Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000990 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04055
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Adi_g035671 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Adi_g081286 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Aev_g09895 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Aev_g16029 No alias not classified & original description: none 0.02 OrthoFinder output from all 39 species
Ala_g06687 STM, SHM1, SHMT1 not classified & original description: none 0.05 OrthoFinder output from all 39 species
Ala_g06688 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Als_g06300 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Aob_g16059 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 39 species
Aop_g11376 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Aspi01Gene56437.t1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Azfi_s0102.g044437 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.01 OrthoFinder output from all 39 species
Cba_g12674 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 39 species
Ceric.28G027700.1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 39 species
Dac_g28484 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Dcu_g14509 SHM2 not classified & original description: none 0.05 OrthoFinder output from all 39 species
Dcu_g14554 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 39 species
Dcu_g21464 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 39 species
Dcu_g49354 SHM2 serine hydroxymethyltransferase *(SHM) & original... 0.08 OrthoFinder output from all 39 species
Dde_g20927 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Ehy_g16256 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Len_g12401 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Msp_g48544 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 39 species
Nbi_g03063 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Ore_g09056 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Pir_g00993 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 39 species
Pnu_g10887 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Pp3c1_27990V3.1 STM, SHM1,... serine transhydroxymethyltransferase 1 0.01 OrthoFinder output from all 39 species
Ppi_g14402 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 39 species
Sam_g36946 No alias EC_2.1 transferase transferring one-carbon group &... 0.01 OrthoFinder output from all 39 species
Smo270566 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.03 OrthoFinder output from all 39 species
Tin_g10060 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 39 species
Tin_g11913 SHM2 not classified & original description: none 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 60 457
No external refs found!