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  5. Lfl_g03990

Lfl_g03990


Description : not classified & original description: none


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03990

Target Alias Description ECC score Gene Family Method Actions
Aop_g09399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G052200.1 Ceric.02G052200 A1-class (Pepsin) protease & original description:... 0.03 OrthoFinder output from all 47 species
Cre04.g219950 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g352650 No alias No description available 0.04 OrthoFinder output from all 47 species
Ehy_g15742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g03890.1 LOC_Os11g03890 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g12231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g038816.1.1 Solyc02g038816 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g32406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 290 356
IPR000504 RRM_dom 142 209
IPR000504 RRM_dom 24 91
No external refs found!