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  5. Ala_g37436

Ala_g37436


Description : not classified & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g37436

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.02 OrthoFinder output from all 47 species
Aev_g20558 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Als_g23007 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Aob_g19131 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15706 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene64070.t1 EMB3011, Aspi01Gene64070 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0580.g078305 No alias not classified & original description: CDS=60-3857 0.03 OrthoFinder output from all 47 species
Cba_g04257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.04 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cre11.g467654 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Dcu_g03121 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Len_g01369 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c11_22160V3.1 Pp3c11_22160 ATP-dependent RNA helicase, putative 0.01 OrthoFinder output from all 47 species
Ppi_g05341 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011158 No alias not classified & original description: CDS=170-2296 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012085 No alias not classified & original description: CDS=161-2176 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025850 ESP3, EMB2733 not classified & original description: CDS=1-522 0.02 OrthoFinder output from all 47 species
Sam_g08957 No alias RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g039550.4.1 Solyc07g039550 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Solyc09g008120.4.1 Solyc09g008120 RNA helicase (Prp22) 0.04 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.04 OrthoFinder output from all 47 species
Spa_g07103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12231 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Tin_g02106 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Tin_g02893 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 790 917
IPR003029 S1_domain 290 358
IPR011709 DEAD-box_helicase_OB_fold 1125 1200
IPR011545 DEAD/DEAH_box_helicase_dom 594 742
IPR007502 Helicase-assoc_dom 979 1067
No external refs found!