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  5. Lfl_g03678

Lfl_g03678


Description : not classified & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03678
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00236350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
Aev_g07025 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aev_g07107 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Ala_g14907 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Als_g01479 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g43713 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Als_g47204 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g01129 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g06045 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aspi01Gene64156.t1 Aspi01Gene64156 deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Aspi01Gene68835.t1 Aspi01Gene68835 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0009.g011912 No alias not classified & original description: CDS=1-1008 0.02 OrthoFinder output from all 47 species
Azfi_s0356.g066782 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g06366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Cba_g08602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G056100.1 Ceric.05G056100 deadenylase component *(CAF1) of mRNA deadenylation... 0.09 OrthoFinder output from all 47 species
Dac_g02678 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.09 OrthoFinder output from all 47 species
Dcu_g01208 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Dde_g02762 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ehy_g00624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
GSVIVT01035897001 No alias Probable CCR4-associated factor 1 homolog 10... 0.03 OrthoFinder output from all 47 species
Gb_19103 No alias deadenylase component CAF1 of CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
LOC_Os09g24990.2 LOC_Os09g24990 Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Len_g11620 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g17479 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Len_g20084 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_127412g0020 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
MA_205414g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
MA_2937g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Msp_g09969 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Nbi_g01805 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Ore_g08887 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ore_g27312 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Pir_g11620 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Ppi_g14365 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021677 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sam_g08624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc11g045130.2.1 Solyc11g045130 Probable CCR4-associated factor 1 homolog 7... 0.04 OrthoFinder output from all 47 species
Spa_g06339 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.1 OrthoFinder output from all 47 species
Tin_g02569 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 20 164
No external refs found!