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  5. Lfl_g03495

Lfl_g03495 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03495

Target Alias Description ECC score Gene Family Method Actions
AT1G59750 ARF1 auxin response factor 1 0.02 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21442 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0019.g015120 ARF10 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004942001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
MA_127981g0010 ARF4 Auxin response factor 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g17172 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20525 ARF6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003591_P003 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e013191_P001 ARF19, IAA22,... transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e014833_P002 ARF1, Zm00001e014833 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 255 338
IPR033389 AUX/IAA_dom 914 950
IPR003340 B3_DNA-bd 129 230
No external refs found!