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  5. Lfl_g03258

Lfl_g03258


Description : GARP subgroup HHO transcription factor & original description: none


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03258
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00241280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AT1G13300 HRS1 myb-like transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G03500 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G37180 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g019107 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g030747 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g042967 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G020200.1 Ceric.06G020200 GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02562 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01011942001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
LOC_Os01g08160.1 LOC_Os01g08160 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g33222 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g14104 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g05162 No alias GARP subgroup HHO transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0185.g025023 No alias GARP subgroup HHO transcription factor & original... 0.05 OrthoFinder output from all 47 species
Solyc02g090400.4.1 Solyc02g090400 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e016724_P001 Zm00001e016724 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 293 344
No external refs found!