Lfl_g02957 (AtRH36, SWA3, RH36)

Aliases : AtRH36, SWA3, RH36

Description : SSU processome assembly factor *(SWA3) & original description: none

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g02957

Target	Alias	Description	ECC score	Gene Family Method
AT1G16280	AtRH36, SWA3, RH36	RNA helicase 36	0.02	OrthoFinder output from all 47 species
Aev_g00934	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Ala_g19548	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g08607	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.06G021600.1	Ceric.06G021600	not classified & original description: pacid=50619132...	0.03	OrthoFinder output from all 47 species
Dac_g04191	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g36206	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	74	242
IPR001650	Helicase_C	283	389

External Links

No external refs found!