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  5. Ala_g28633

Ala_g28633 (ATLUP2, LUP2)


Aliases : ATLUP2, LUP2

Description : squalene-hopene cyclase & original description: none


Gene families : OG0002047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g28633

Target Alias Description ECC score Gene Family Method Actions
Ala_g24829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05686 No alias squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12100 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g55523 No alias squalene-hopene cyclase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene10453.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24548.t1 Aspi01Gene24548 squalene-hopene cyclase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene24550.t1 Aspi01Gene24550 squalene-hopene cyclase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene24551.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24552.t1 Aspi01Gene24552 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36059.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36061.t1 Aspi01Gene36061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36140.t1 Aspi01Gene36140 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63178.t1 Aspi01Gene63178 EC_5.4 intramolecular transferase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene63179.t1 Aspi01Gene63179 EC_5.4 intramolecular transferase & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0110.g045523 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2274 0.06 OrthoFinder output from all 47 species
Cba_g05266 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z102200.1 ATLUP2, LUP2,... squalene-hopene cyclase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.24G077100.1 ATLUP2, LUP2,... not classified & original description: pacid=50629603... 0.02 OrthoFinder output from all 47 species
Ceric.24G081400.1 ATLUP2, LUP2,... squalene-hopene cyclase & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g19102 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g19615 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29334 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31336 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g20110.1 No alias Dammaradiene synthase OS=Dryopteris crassirhizoma... 0.02 OrthoFinder output from all 47 species
Ore_g42306 No alias EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18017 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c1_4750V3.1 LUP1, ATLUP1, Pp3c1_4750 lupeol synthase 1 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004522 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2067 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007471 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2091 0.06 OrthoFinder output from all 47 species
Spa_g37330 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46323 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20996 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
InterPro domains Description Start Stop
IPR032697 SQ_cyclase_N 33 319
IPR032696 SQ_cyclase_C 598 700
IPR032696 SQ_cyclase_C 329 561
No external refs found!