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  5. Ala_g28147

Ala_g28147 (RHD3)


Aliases : RHD3

Description : ER tubulae formation factor *(RHD3/RL) & original description: none


Gene families : OG0001619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g28147

Target Alias Description ECC score Gene Family Method Actions
AT3G13870 RHD3 Root hair defective 3 GTP-binding protein (RHD3) 0.06 OrthoFinder output from all 47 species
Adi_g021765 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Adi_g084107 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Cba_g12043 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G037600.1 Ceric.05G037600 ER tubulae formation factor *(RHD3/RL) & original... 0.12 OrthoFinder output from all 47 species
Dac_g33613 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g51662 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.08 OrthoFinder output from all 47 species
Ehy_g08614 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01016855001 No alias Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
LOC_Os12g41170.1 LOC_Os12g41170 ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
Len_g08736 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.09 OrthoFinder output from all 47 species
Lfl_g04180 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.07 OrthoFinder output from all 47 species
MA_10428984g0020 RHD3 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Pir_g18963 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.05 OrthoFinder output from all 47 species
Smo73603 RHD3 Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
Solyc03g121590.3.1 RHD3, Solyc03g121590 ER tubulae formation factor (RHD3/RL) 0.05 OrthoFinder output from all 47 species
Spa_g05226 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e020502_P002 RHD3, Zm00001e020502 ER tubulae formation factor (RHD3/RL) 0.05 OrthoFinder output from all 47 species
Zm00001e027781_P001 RHD3, Zm00001e027781 ER tubulae formation factor (RHD3/RL) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR046758 Sey1/RHD3-like_3HB 228 673
No external refs found!