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  5. Ala_g27583

Ala_g27583


Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g27583
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.02 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.02 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.05 OrthoFinder output from all 47 species
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.02 OrthoFinder output from all 47 species
Adi_g013762 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19777 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37853 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38995 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10720 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g63228 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65574 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033628 RHS14 EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 0.05 OrthoFinder output from all 47 species
Ceric.05G036500.1 Ceric.05G036500 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.26G007400.1 Ceric.26G007400 EC_4.2 carbon-oxygen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.30G051100.1 RHS14, Ceric.30G051100 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.30G051200.1 RHS14, Ceric.30G051200 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.31G056400.1 Ceric.31G056400 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g35840 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
Gb_02248 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
Gb_19802 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.02 OrthoFinder output from all 47 species
Len_g50589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50590 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10430145g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10437227g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_62112g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_66914g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Mp8g10190.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Msp_g38292 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_16370V3.1 Pp3c17_16370 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc06g071840.3.1 Solyc06g071840 Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc11g008140.3.1 Solyc11g008140 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40115 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41522 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e004654_P002 Zm00001e004654 pectate lyase 0.04 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.02 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.03 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 165 347
No external refs found!