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  5. Ala_g25498

Ala_g25498 (CHC1)


Aliases : CHC1

Description : SMARCD component *(SWP73) of chromatin remodeling complex & original description: none


Gene families : OG0004548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g25498

Target Alias Description ECC score Gene Family Method Actions
Ceric.23G016000.1 CHC1, Ceric.23G016000 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021326.23 No alias Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g08168 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01008530001 CHC1 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Gb_09155 CHC1 component BAF60 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Mp4g15340.1 CHC1 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Tin_g03955 CHC1 SMARCD component *(SWP73) of chromaTin remodeling... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 298 369
No external refs found!