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  5. Ala_g24235

Ala_g24235


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g24235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00042600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
AT1G50270 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036768 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13877 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08005.t1 Aspi01Gene08005 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0268.g061096 No alias not classified & original description: CDS=119-2467 0.03 OrthoFinder output from all 47 species
Cba_g07105 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G022300.1 Ceric.10G022300 not classified & original description: pacid=50612428... 0.03 OrthoFinder output from all 47 species
Ceric.13G069100.1 CRR22, Ceric.13G069100 not classified & original description: pacid=50635982... 0.03 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.03 OrthoFinder output from all 47 species
Ceric.39G046500.1 Ceric.39G046500 not classified & original description: pacid=50582543... 0.02 OrthoFinder output from all 47 species
Dcu_g06472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08744 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g02338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03325 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03890 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 OrthoFinder output from all 47 species
Nbi_g27744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g24821 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62128 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22848 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo70183 OTP84 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Spa_g22195 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 127
IPR002885 Pentatricopeptide_repeat 285 331
IPR002885 Pentatricopeptide_repeat 387 433
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 157 181
IPR002885 Pentatricopeptide_repeat 259 283
IPR002885 Pentatricopeptide_repeat 55 80
IPR002885 Pentatricopeptide_repeat 361 386
IPR002885 Pentatricopeptide_repeat 491 535
No external refs found!