Ala_g23510 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : component *(CAP-C/SMC4) of condensin I/II complex & original description: none

Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g23510

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00079920	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.1	OrthoFinder output from all 47 species
AT5G48600	ATCAP-C, ATSMC4,...	structural maintenance of chromosome 3	0.02	OrthoFinder output from all 47 species
Adi_g019665	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Als_g16126	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Aop_g09601	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.14	OrthoFinder output from all 47 species
Aspi01Gene04548.t1	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
Azfi_s0093.g043172	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Cba_g14904	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species
Ceric.07G037500.1	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.17	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000711.41	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.07	OrthoFinder output from all 47 species
Cre12.g493400	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.08	OrthoFinder output from all 47 species
Dac_g01058	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.15	OrthoFinder output from all 47 species
Dcu_g14679	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.13	OrthoFinder output from all 47 species
GSVIVT01011408001	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.13	OrthoFinder output from all 47 species
Gb_03310	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.13	OrthoFinder output from all 47 species
LOC_Os05g41750.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.09	OrthoFinder output from all 47 species
Len_g03914	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.13	OrthoFinder output from all 47 species
Lfl_g38059	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.03	OrthoFinder output from all 47 species
MA_10325649g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.02	OrthoFinder output from all 47 species
MA_257738g0010	ATCAP-C, ATSMC4,...	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_317249g0010	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.14	OrthoFinder output from all 47 species
MA_7369647g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.1	OrthoFinder output from all 47 species
MA_82161g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.11	OrthoFinder output from all 47 species
Mp5g06430.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.15	OrthoFinder output from all 47 species
Msp_g32088	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.17	OrthoFinder output from all 47 species
Nbi_g09270	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.17	OrthoFinder output from all 47 species
Ppi_g09236	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species
Sam_g07968	No alias	component *(CAP-C/SMC4) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species
Solyc02g087980.3.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.06	OrthoFinder output from all 47 species
Spa_g10497	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Tin_g01288	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	21	1223
IPR010935	SMC_hinge	551	667

External Links

No external refs found!

Ala_g23510 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation