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  5. Lfl_g02277

Lfl_g02277


Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aev_g05538 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ala_g07168 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Aop_g27842 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Azfi_s0027.g023708 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.17G002800.1 Ceric.17G002800 RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Dac_g23858 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Dcu_g03136 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Dcu_g12374 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Ehy_g01701 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.06 OrthoFinder output from all 47 species
MA_167255g0020 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.02 OrthoFinder output from all 47 species
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Msp_g15177 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Msp_g19222 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ore_g41022 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Pnu_g07586 HEN2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo79650 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Solyc01g103080.3.1 Solyc01g103080 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Spa_g08781 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Tin_g04756 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species
Zm00001e025923_P001 HEN2, Zm00001e025923 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 508 784
IPR001650 Helicase_C 350 454
IPR011545 DEAD/DEAH_box_helicase_dom 62 209
IPR012961 Ski2/MTR4_C 812 981
No external refs found!